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Bioconductor2 months ago
Branch-specific workflows | devel branch | RELEASE_3_17 branch | RELEASE_* branches | Session Info
rworkflows 1.0.12Authors: `r auths <- eval(parse(text = gsub('person','c',utils::packageDescription('rworkflows', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`bioconductor.Rmd
Dependency graph2 months ago
Create | Install required packages | Create graph | Save data | Count stars/clones/views | Show | rworkflow depgraph | Identify highly downloaded packages | Assess R repository usage | Session Info
rworkflows 1.0.12Authors: `r auths <- eval(parse(text = gsub('person','c',utils::packageDescription('rworkflows', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`depgraph.Rmd
Docker/Singularity Containers2 months ago
Installation | Method 1: via Docker | NOTES | Method 2: via Singularity | Usage | Session Info
rworkflows 1.0.12Authors: `r auths <- eval(parse(text = gsub("person","c",utils::packageDescription("rworkflows", fields = "Authors@R"))));paste(auths[names(auths)=="given"],auths[names(auths)=="family"], collapse = ", ")`docker.Rmd
Repositories report2 months ago
Install required packages | Get all packages per repo | Upset plot | Save results | Session Info
rworkflows 1.0.12Authors: `r auths <- eval(parse(text = gsub('person','c',utils::packageDescription('rworkflows', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`repos.Rmd
Get Started2 months ago
GitHub Secrets | use_workflow | dynamic action | static workflow | use_badges | use_dockerfile | Templates | README | Vignette: Get started | Vignette: docker | Adding Python | Using Python | Using conda | Session Info
rworkflows 1.0.12Authors: `r auths <- eval(parse(text = gsub('person','c',utils::packageDescription('rworkflows', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`rworkflows.Rmd
Infer species6 months ago
Installation | Introduction | Examples | Mouse genes | Infer the species | Rat genes | Create example data | Human genes | Additional test_species | Session Info
orthogene 1.19.3Author: Brian M. Schilderinfer_species.Rmd
orthogene: Getting Started6 months ago
orthogene: Interspecies gene mapping | Installation | Examples | Convert orthologs | Note on non-1:1 orthologs | Map species | Report orthologs | Map genes | Aggregate mapped genes | Get all genes | Session Info
orthogene 1.19.3Author: Brian M. Schilderorthogene.Rmd
Get started8 months ago
Overview | Introduction | Data | Installation | Running MotifPeeker | Load the package | Load the example datasets | Prepare input data | Peak Files | Alignment Files | Genome Build | Motif Files | Run MotifPeeker | Required Inputs | Optional Inputs | Other Options | Runtime Guidance | Outputs | Troubleshooting | Future Enhancements | Session Info
MotifPeeker 1.5.0Hiranyamaya Dash MotifPeeker.Rmd
EpiCompare: Getting started1 years ago
Overview | Introduction | Data | Installation | Running EpiCompare | Load package and example datasets | Prepare input data | Peaklist | Blacklist | Picard summary files | Reference file | Output Directory | Run EpiCompare | Optional plots | Other options | Output | Future Enhancements | Code used to generate the example report | Session Information
EpiCompare 1.17.0Authors: `r auths <- eval(parse(text = gsub('person','c',read.dcf('../DESCRIPTION', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`EpiCompare.Rmd
Troubleshooting2 years ago
MEME Suite Related | MotifPeeker() Related | Session Info
MotifPeeker 1.5.0Hiranyamaya Dash troubleshooting.Rmd
Docker/Singularity Containers3 years ago
Installation | Method 1: via Docker | NOTES | Method 2: via Singularity | Usage | Session Info
orthogene 1.19.3Authors: `r auths <- eval(parse(text = gsub("person","c",read.dcf("../DESCRIPTION", fields = "Authors@R"))));paste(auths[names(auths)=="given"],auths[names(auths)=="family"], collapse = ", ")`docker.Rmd
Example report3 years ago
EpiArchives is a public archive for interactive HTML reports generated by EpiCompare and the associated code used to create them. | Home | Reports | atac_dnase_chip_example | atac_dnase_example | Session Information
EpiCompare 1.17.0Authors: `r auths <- eval(parse(text = gsub('person','c',read.dcf('../DESCRIPTION', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`example_report.Rmd
Docker/Singularity Containers4 years ago
DockerHub | Installation | Method 1: via Docker | NOTES | Method 2: via Singularity | Usage | Session Info
EpiCompare 1.17.0Authors: `r auths <- eval(parse(text = gsub('person','c',read.dcf('../DESCRIPTION', fields = 'Authors@R'))));paste(auths[names(auths)=='given'],auths[names(auths)=='family'], collapse = ', ')`docker.Rmd