Branch-specific workflows | devel branch | RELEASE_3_17 branch | RELEASE_* branches | Session Info
Package: rworkflows 1.0.12
Hiranyamaya (Hiru) Dash
rworkflows: Test, Document, Containerise, and Deploy R Packages
Reproducibility is essential to the progress of research, yet achieving it remains elusive even in computational fields. Continuous Integration (CI) platforms offer a powerful way to launch automated workflows to check and document code, but often require considerable time, effort, and technical expertise to setup. We therefore developed the rworkflows suite to make robust CI workflows easy and freely accessible to all R package developers. rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template, 2) an R package to quickly implement a standardised workflow, and 3) a centrally maintained GitHub Action.
Authors:
rworkflows_1.0.12.tar.gz
rworkflows_1.0.12.zip(r-4.7)rworkflows_1.0.12.zip(r-4.6)rworkflows_1.0.12.zip(r-4.5)
rworkflows_1.0.12.tgz(r-4.6-any)rworkflows_1.0.12.tgz(r-4.5-any)
rworkflows_1.0.12.tar.gz(r-4.7-any)rworkflows_1.0.12.tar.gz(r-4.6-any)
rworkflows_1.0.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rworkflows/json (API)
| # Install 'rworkflows' in R: |
| install.packages('rworkflows', repos = c('https://neurogenomics.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/neurogenomics/rworkflows/issues
Datasets:
- biocpkgtools_db - Static Bioc packages list
softwareworkflowmanagementbioconductorcontainerscontinuous-integrationdockerdockerhubgithub-actionsreproducibilityworkflows
Last updated from:6aaf493488. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 223 | ||
| source / vignettes | OK | 237 | ||
| linux-release-x86_64 | OK | 229 | ||
| macos-release-arm64 | OK | 294 | ||
| macos-oldrel-arm64 | OK | 212 | ||
| windows-devel | OK | 148 | ||
| windows-release | OK | 174 | ||
| windows-oldrel | OK | 160 | ||
| wasm-release | OK | 186 |
Exports:bioc_r_versionsconda_exportconstruct_authorsconstruct_conda_ymlconstruct_contconstruct_runnersdt_to_descfill_descriptionget_descriptionget_hexinfer_biocviewsinfer_depsinfer_docker_orgis_ghause_badgesuse_codespaceuse_dockerfileuse_issue_templateuse_readmeuse_vignette_dockeruse_vignette_getstarteduse_workflow
Dependencies:askpassbadgerBiocManagerclicliprcpp11crayoncredentialscurldata.tabledescdigestdlstatsfarverfsgertggplot2gitcredsgluegtableherehttr2iniisobandjsonlitelabelinglifecyclemagrittropensslpurrrR6rappdirsRColorBrewerrenvrlangrprojrootrstudioapirvcheckS7scalessysusethisvctrsviridisLitewhiskerwithryamlyulab.utilszip
Bioconductor
Last update: 2026-05-06
Started: 2023-09-14
Dependency graph
Create | Install required packages | Create graph | Save data | Count stars/clones/views | Show | rworkflow depgraph | Identify highly downloaded packages | Assess R repository usage | Session Info
Last update: 2026-05-06
Started: 2022-12-09
Docker/Singularity Containers
Installation | Method 1: via Docker | NOTES | Method 2: via Singularity | Usage | Session Info
Last update: 2026-05-06
Started: 2022-11-06
Repositories report
Install required packages | Get all packages per repo | Upset plot | Save results | Session Info
Last update: 2026-05-06
Started: 2022-12-14
Get Started
GitHub Secrets | use_workflow | dynamic action | static workflow | use_badges | use_dockerfile | Templates | README | Vignette: Get started | Vignette: docker | Adding Python | Using Python | Using conda | Session Info
Last update: 2026-05-06
Started: 2022-11-07
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bioconductor / R versions | bioc_r_versions |
| Static Bioc packages list | biocpkgtools_db |
| Conda export | conda_export |
| Construct authors | construct_authors |
| Construct a conda yaml | construct_conda_yml |
| Construct containers list | construct_cont |
| Construct runners | construct_runners |
| data.table to desc | dt_to_desc |
| Fill _DESCRIPTION_ | fill_description |
| Get DESCRIPTION | get_description |
| Get hex | get_hex |
| Infer biocViews | infer_biocviews |
| Infer dependencies | infer_deps |
| Infer Docker registry organisation name | infer_docker_org |
| Is GitHub Action | is_gha |
| Use badges | use_badges |
| Use Codespace | use_codespace |
| Use Dockerfile | use_dockerfile |
| Use Issue Template | use_issue_template |
| Use README | use_readme |
| Use vignette: Docker | use_vignette_docker |
| Use vignette: Get started | use_vignette_getstarted |
| Use GitHub Actions workflow | use_workflow |
